Chr Start End Ref Alt Func.refGene Gene.refGene GeneDetail.refGene ExonicFunc.refGene AAChange.refGene Xref.refGene Maybe_Pathogenic NC_fgh WT_fgh HZ_fgh HH_fgh Other_fgh FGH_1522 FGH_MAF dbscSNV_ADA_SCORE dbscSNV_RF_SCORE CLNALLELEID CLNDN CLNDISDB CLNREVSTAT CLNSIG ONCDN ONCDISDB ONCREVSTAT ONC SCIDN SCIDISDB SCIREVSTAT SCI SIFT_score SIFT_pred Polyphen2_HDIV_score Polyphen2_HDIV_pred Polyphen2_HVAR_score Polyphen2_HVAR_pred LRT_score LRT_pred MutationTaster_score MutationTaster_pred MutationAssessor_score MutationAssessor_pred FATHMM_score FATHMM_pred RadialSVM_score RadialSVM_pred LR_score LR_pred VEST3_score CADD_raw CADD_phred GERP++_RS phyloP46way_placental phyloP100way_vertebrate SiPhy_29way_logOdds REVEL MCAP esp6500siv2_all 1000g2015aug_all ExAC_ALL ExAC_AFR ExAC_AMR ExAC_EAS ExAC_FIN ExAC_NFE ExAC_OTH ExAC_SAS Kaviar_AF Kaviar_AC Kaviar_AN avsnp151 gnomad41_exome_AF gnomad41_exome_AF_raw gnomad41_exome_AF_XX gnomad41_exome_AF_XY gnomad41_exome_AF_grpmax gnomad41_exome_faf95 gnomad41_exome_faf99 gnomad41_exome_fafmax_faf95_max gnomad41_exome_fafmax_faf99_max gnomad41_exome_AF_afr gnomad41_exome_AF_amr gnomad41_exome_AF_asj gnomad41_exome_AF_eas gnomad41_exome_AF_fin gnomad41_exome_AF_mid gnomad41_exome_AF_nfe gnomad41_exome_AF_remaining gnomad41_exome_AF_sas gnomad41_genome_AF gnomad41_genome_AF_raw gnomad41_genome_AF_XX gnomad41_genome_AF_XY gnomad41_genome_AF_grpmax gnomad41_genome_faf95 gnomad41_genome_faf99 gnomad41_genome_fafmax_faf95_max gnomad41_genome_fafmax_faf99_max gnomad41_genome_AF_afr gnomad41_genome_AF_ami gnomad41_genome_AF_amr gnomad41_genome_AF_asj gnomad41_genome_AF_eas gnomad41_genome_AF_fin gnomad41_genome_AF_mid gnomad41_genome_AF_nfe gnomad41_genome_AF_remaining gnomad41_genome_AF_sas SIFT_score.1 SIFT_converted_rankscore SIFT_pred.1 SIFT4G_score SIFT4G_converted_rankscore SIFT4G_pred Polyphen2_HDIV_score.1 Polyphen2_HDIV_rankscore Polyphen2_HDIV_pred.1 Polyphen2_HVAR_score.1 Polyphen2_HVAR_rankscore Polyphen2_HVAR_pred.1 LRT_score.1 LRT_converted_rankscore LRT_pred.1 LRT_Omega MutationTaster_score.1 MutationTaster_converted_rankscore MutationTaster_pred.1 MutationAssessor_score.1 MutationAssessor_rankscore MutationAssessor_pred.1 FATHMM_score.1 FATHMM_converted_rankscore FATHMM_pred.1 PROVEAN_score PROVEAN_converted_rankscore PROVEAN_pred VEST4_score VEST4_rankscore MetaSVM_score MetaSVM_rankscore MetaSVM_pred MetaLR_score MetaLR_rankscore MetaLR_pred Reliability_index MetaRNN_score MetaRNN_rankscore MetaRNN_pred M-CAP_score M-CAP_rankscore M-CAP_pred REVEL_score REVEL_rankscore MutPred_score MutPred_rankscore MVP_score MVP_rankscore gMVP_score gMVP_rankscore MPC_score MPC_rankscore PrimateAI_score PrimateAI_rankscore PrimateAI_pred DEOGEN2_score DEOGEN2_rankscore DEOGEN2_pred BayesDel_addAF_score BayesDel_addAF_rankscore BayesDel_addAF_pred BayesDel_noAF_score BayesDel_noAF_rankscore BayesDel_noAF_pred ClinPred_score ClinPred_rankscore ClinPred_pred LIST-S2_score LIST-S2_rankscore LIST-S2_pred VARITY_R_score VARITY_R_rankscore VARITY_ER_score VARITY_ER_rankscore VARITY_R_LOO_score VARITY_R_LOO_rankscore VARITY_ER_LOO_score VARITY_ER_LOO_rankscore ESM1b_score ESM1b_rankscore ESM1b_pred EVE_score EVE_rankscore AlphaMissense_score AlphaMissense_rankscore AlphaMissense_pred Aloft_pred Aloft_Confidence CADD_raw.1 CADD_raw_rankscore CADD_phred.1 DANN_score DANN_rankscore fathmm-MKL_coding_score fathmm-MKL_coding_rankscore fathmm-MKL_coding_pred fathmm-MKL_coding_group fathmm-XF_coding_score fathmm-XF_coding_rankscore fathmm-XF_coding_pred Eigen-raw_coding Eigen-raw_coding_rankscore Eigen-phred_coding Eigen-PC-raw_coding Eigen-PC-raw_coding_rankscore Eigen-PC-phred_coding GenoCanyon_score GenoCanyon_rankscore integrated_fitCons_score integrated_fitCons_rankscore integrated_confidence_value GM12878_fitCons_score GM12878_fitCons_rankscore GM12878_confidence_value H1-hESC_fitCons_score H1-hESC_fitCons_rankscore H1-hESC_confidence_value HUVEC_fitCons_score HUVEC_fitCons_rankscore HUVEC_confidence_value LINSIGHT LINSIGHT_rankscore GERP++_NR GERP++_RS.1 GERP++_RS_rankscore phyloP100way_vertebrate.1 phyloP100way_vertebrate_rankscore phyloP470way_mammalian phyloP470way_mammalian_rankscore phyloP17way_primate phyloP17way_primate_rankscore phastCons100way_vertebrate phastCons100way_vertebrate_rankscore phastCons470way_mammalian phastCons470way_mammalian_rankscore phastCons17way_primate phastCons17way_primate_rankscore SiPhy_29way_pi SiPhy_29way_logOdds.1 SiPhy_29way_logOdds_rankscore bStatistic bStatistic_converted_rankscore Interpro_domain GTEx_V8_eQTL_gene GTEx_V8_eQTL_tissue GTEx_V8_sQTL_gene GTEx_V8_sQTL_tissue eQTLGen_snp_id InterVar_automated PVS1 PS1 PS2 PS3 PS4 PM1 PM2 PM3 PM4 PM5 PM6 PP1 PP2 PP3 PP4 PP5 BA1 BS1 BS2 BS3 BS4 BP1 BP2 BP3 BP4 BP5 BP6 BP7 Otherinfo1 Otherinfo2 Otherinfo3 Otherinfo4 Otherinfo5 Otherinfo6 Otherinfo7 Otherinfo8 Otherinfo9 Otherinfo10 Otherinfo11 Otherinfo12 NSWES954 WT HH HZ NC chr1 6445936 6445936 G A splicing ESPN NM_001367473:exon7:c.1464+1G>A;NM_001367474:exon7:c.1464+1G>A;NM_031475:exon7:c.1464+1G>A . . Deafness, autosomal recessive 36, Autosomal recessive;Deafness, neurosensory, without vestibular involvement, autosomal dominant (3) YES . . . . . . . 1.0000 0.944 442877 not_provided|Autosomal_recessive_nonsyndromic_hearing_loss_36 MedGen:C3661900|MONDO:MONDO:0012170,MedGen:C1837007,OMIM:609006,Orphanet:90636 criteria_provided,_multiple_submitters,_no_conflicts Likely_pathogenic . . . . . . . . . . . . . . . . 1.000 D . . . . . . . . . 3.566 18.17 4.35 2.250 6.153 15.62 . . . . 1.721e-05 0 0 0 0 1.571e-05 0 6.187e-05 1.29e-05 2 154602 rs752649606 1.233e-05 1.231e-05 5.45e-06 1.927e-05 0.0002 7.7e-06 6.36e-06 0.0001 8.655e-05 0 0 0 0 0 0 8.995e-07 3.314e-05 0.0002 1.315e-05 1.313e-05 0 2.69e-05 0.0004 2.19e-06 8.2e-07 7.307e-05 3.035e-05 0 0 0 0 0 0 0 0 0 0.0004 . . . . . . . . . . . . . . . . 1 0.81001 D . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.17297 0.71396 D 0.214283 0.83886 D . . . . . . . . . . . . . . . . . . . . . . .;.;. .;.;. 6.117038 0.94599 34 0.99545362843443475 0.70773 0.77108 0.37877 D AEFGBCI . . . 0.99641452250496 0.95632 13.80947 0.804337271990419 0.90091 10.25321 0.9999999999998 0.74766 0.056701 0.00814 0 0.063554 0.01753 0 0.074216 0.02223 0 0.079188 0.02158 0 0.956349 0.63754 4.35 4.35 0.51454 4.900000 0.62939 9.645000 0.81157 0.606000 0.46413 1.000000 0.71638 1.000000 0.68203 0.944000 0.48669 0.0:0.0:1.0:0.0 15.62 0.76548 834 0.38640 .;.;. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.02381 1199.98 34 chr1 6445936 . G A 1199.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=-1.844e+00;DP=831;ExcessHet=0.0000;FS=1.553;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=59.93;MQRankSum=1.11;QD=11.01;ReadPosRankSum=-1.019e+00;SOR=0.504 GT:AD:DP:GQ:PL 0/1:50,59:109:99:1214,0,1083 20 0 1 0 chr1 158678434 158678434 A G exonic SPTA1 . nonsynonymous SNV SPTA1:NM_003126:exon6:c.T779C:p.L260P, Elliptocytosis-2, Autosomal dominant;Pyropoikilocytosis, Autosomal recessive;Spherocytosis, type 3, Autosomal recessive YES 0 1520 2 0 0 2 0.000657462 . . 27883 Elliptocytosis_2|not_provided MONDO:MONDO:0007533,MedGen:C1851741,OMIM:130600,Orphanet:288|MedGen:C3661900 criteria_provided,_multiple_submitters,_no_conflicts Pathogenic/Likely_pathogenic . . . . . . . . 0 D 1.0 D 1.0 D 0.024 N 1.000 A 3.42 M -1.43 T 0.642 D 0.700 D 0.966 2.859 15.52 4.66 2.080 8.035 13.354 0.839 0.242826543064 . . 2.488e-05 0.0003 0 0 0 0 0 0 1.94e-05 3 154602 rs121918634 6.842e-06 6.84e-06 5.446e-06 8.252e-06 0.0002 3.46e-06 2.52e-06 0.0001 8.684e-05 0.0002 0 0 0 0 0 0 3.313e-05 0 5.256e-05 5.253e-05 3.853e-05 6.725e-05 0.0002 2.557e-05 1.83e-05 9.563e-05 6.961e-05 0.0002 0 0 0 0 0 0 0 0 0 0.0 0.91255 D 0.013 0.63109 D 1.0 0.90584 D 1.0 0.97372 D 0.024363 0.26274 N 0.000000 1 0.81001 A 3.555 0.93317 H -1.43 0.80730 T -6.32 0.90852 D 0.929 0.93370 0.642 0.92447 D 0.700 0.89672 D 9 0.9909502 0.99610 D 0.242827 0.88776 D 0.839 0.94952 0.908 0.98109 0.961458484432 0.96104 0.9090546975298317 0.90879 0.26085393997 0.28643 0.527930021286 0.42742 T 0.721158 0.92121 D 0.229597 0.76683 D 0.371459 0.91123 D 0.975009918212891 0.70747 D 0.565643 0.19997 T 0.9721399 0.98456 0.9374833 0.97601 0.9683769 0.98107 0.9529345 0.98574 -14.304 0.94003 D 0.769383698944818 0.85050 0.928 0.84870 P .;. .;. 3.496289 0.48898 22.7 0.99791721544089274 0.87750 0.95258 0.64026 D AEFBCI 0.962700 0.98439 D 0.628944081631176 0.75013 6.231428 0.443688455940145 0.64311 4.684 0.99989123174347 0.45129 0.487112 0.14033 0 0.573888 0.26702 0 0.573888 0.23631 0 0.564101 0.26826 0 . . 4.66 4.66 0.57857 8.481000 0.90279 11.256000 0.90911 0.756000 0.94297 1.000000 0.71638 1.000000 0.68203 0.167000 0.20881 1.0:0.0:0.0:0.0 13.354 0.60061 637 0.64373 .;. . . . . . Uncertain significance 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0.02381 796.98 33 chr1 158678434 . A G 796.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=0.056;DP=787;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=8.76;ReadPosRankSum=0.072;SOR=0.657 GT:AD:DP:GQ:PL 0/1:53,38:91:99:811,0,1259 20 0 1 0 chr2 88576644 88576644 G A exonic EIF2AK3 . nonsynonymous SNV EIF2AK3:NM_001313915:exon12:c.C1493T:p.P498L Wolcott-Rallison syndrome, Autosomal recessive YES . . . . . . . . . 1419605 not_provided|Inborn_genetic_diseases MedGen:C3661900|MeSH:D030342,MedGen:C0950123 criteria_provided,_multiple_submitters,_no_conflicts Uncertain_significance . . . . . . . . 0.05 D 1.0 D 0.999 D 0.000 D 1.000 D 2.54 M 1.69 T -0.754 T 0.197 T 0.725 4.575 24.8 5.48 2.565 6.488 19.341 0.455 0.081945916687 . . 1.649e-05 0 0 0 0 0 0 0.0001 1.29e-05 2 154602 rs752306602 1.437e-05 1.436e-05 1.225e-05 1.65e-05 0.0002 9.23e-06 7.84e-06 0.0001 9.45e-05 2.987e-05 0 0 0 0 0 2.698e-06 1.656e-05 0.0002 1.314e-05 1.313e-05 0 2.689e-05 0.0002 2.18e-06 8.2e-07 . . 0 0 0 0 0.0002 0 0 0 0 0.0002 0.005 0.63226 D 0.046 0.49120 D 1.0 0.90584 D 0.999 0.92359 D 0.000000 0.84330 D 0.000000 1 0.81001 D 2.88 0.83451 M 1.69 0.27032 T -4.57 0.78721 D 0.85 0.84609 -0.7537 0.57742 T 0.197 0.55215 T 10 0.81030935 0.80322 D 0.081946 0.73794 D 0.455 0.75415 0.763 0.89133 0.846449383411 0.84497 0.8522391688266304 0.85185 0.710764796044 0.61698 0.77463966608 0.78120 T 0.431 0.77947 T -0.1053 0.35547 T -0.129353 0.61027 T 0.838449895381927 0.49201 D 0.953905 0.82456 D 0.35898674 0.57759 0.35219693 0.60802 0.35898674 0.57759 0.35219693 0.60801 -11.657 0.83140 D . . 0.192 0.41141 B .;.;. .;.;. 5.404019 0.90485 31 0.99892754348136192 0.96666 0.97850 0.77597 D AEFBI 0.679481 0.64349 D 0.800846810237405 0.86157 8.796839 0.76607262895648 0.87352 9.192693 0.999998745440762 0.74766 0.706548 0.73137 0 0.724815 0.89359 0 0.724815 0.87919 0 0.714379 0.83352 0 . . 5.48 5.48 0.80675 6.597000 0.73999 . . 0.618000 0.50648 1.000000 0.71638 1.000000 0.68203 0.982000 0.59238 0.0:0.0:1.0:0.0 19.341 0.94330 841 0.37094 Protein kinase domain|Protein kinase domain|Protein kinase domain;Protein kinase domain|Protein kinase domain|Protein kinase domain;Protein kinase domain|Protein kinase domain|Protein kinase domain . . . . . Uncertain significance 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0.02381 749.98 33 chr2 88576644 . G A 749.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=2.18;DP=771;ExcessHet=0.0000;FS=0.883;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=9.62;ReadPosRankSum=-1.730e-01;SOR=0.846 GT:AD:DP:GQ:PL 0/1:46,32:78:99:764,0,1048 20 0 1 0 chr2 178709578 178709578 T C exonic TTN . nonsynonymous SNV TTN:NM_133378:exon96:c.A25009G:p.I8337V Cardiomyopathy, dilated, 1G;Cardiomyopathy, familial hypertrophic, 9;Muscular dystrophy, limb-girdle, type 2J, Autosomal recessive;Myopathy, early-onset, with fatal cardiomyopathy, Autosomal recessive;Myopathy, proximal, with early respiratory muscle involvement;Tibial muscular dystrophy, tardive, Autosomal dominant YES 0 1519 3 0 0 3 0.000986518 . . 173342 Dilated_cardiomyopathy_1G|TTN-related_disorder|not_provided|Early-onset_myopathy_with_fatal_cardiomyopathy|not_specified|Autosomal_recessive_limb-girdle_muscular_dystrophy_type_2J|Myopathy,_myofibrillar,_9,_with_early_respiratory_failure|Supraventricular_tachycardia|Tibial_muscular_dystrophy MONDO:MONDO:0011400,MedGen:C1858763,OMIM:604145,Orphanet:154|.|MedGen:C3661900|MONDO:MONDO:0012714,MedGen:C2673677,OMIM:611705,Orphanet:289377|MedGen:CN169374|MONDO:MONDO:0012127,MedGen:C1837342,OMIM:608807,Orphanet:140922|MONDO:MONDO:0011362,MedGen:C1863599,OMIM:603689,Orphanet:178464,Orphanet:34521|Human_Phenotype_Ontology:HP:0004755,MedGen:C0039240|MONDO:MONDO:0010870,MedGen:C1838244,OMIM:600334,Orphanet:609 criteria_provided,_conflicting_classifications Conflicting_classifications_of_pathogenicity . . . . . . . . 0 D 0.0 B 0.002 B . . 1.000 D -1.025 N 1.23 T -1.067 T 0.032 T 0.267 0.374 6.030 -0.833 -0.355 0.340 12.287 0.066 0.0104756147227 0.0002 . 0.0002 0 8.772e-05 0 0 0.0002 0.0011 0 0.0001294 20 154602 rs371826762 0.0002 0.0002 0.0002 0.0002 0.0056 0.0002 0.0002 0.0041 0.0036 0 0.0002 0.0025 7.596e-05 0 0.0056 0.0001 0.0003 3.487e-05 0.0002 0.0002 0.0001 0.0002 0.0002 0.0001 0.0001 6.803e-05 5.087e-05 2.405e-05 0 0 0.0023 0.0002 0 0.0238 0.0001 0.0005 0 0.583 0.05936 T . . . 0.0 0.02946 B 0.002 0.06944 B . . . . 1 0.81001 D . . . 1.23 0.36872 T -0.28 0.11547 N 0.113 0.10769 -1.0668 0.10131 T 0.032 0.13811 T 9 0.0077707767 0.00177 T 0.010476 0.27066 T 0.066 0.19193 . . 0.119812018005 0.11559 . . 0.0706562436126 0.07918 0.250583171844 0.03830 T . . . -0.358762 0.04200 T -0.527412 0.19545 T 0.00681246974402369 0.00077 T 0.631037 0.28129 T . . . . . . . . -1.64 0.02518 T . . 0.058 0.00670 B .;.;.;. .;.;.;. 0.402988 0.07739 4.423 0.6451002309517706 0.07513 0.03339 0.08418 N AEFBI 0.124991 0.24131 N -1.26632090298818 0.04088 0.1838568 -1.19982553831079 0.05914 0.2831301 0.00256020339293704 0.09527 0.553676 0.25195 0 0.588015 0.36545 0 0.618467 0.43123 0 0.613276 0.41899 0 . . 5.9 -0.833 0.10237 0.338000 0.19599 . . -0.123000 0.13640 0.036000 0.20778 0.023000 0.20922 0.382000 0.26379 0.0:0.5554:0.0:0.4446 12.287 0.54114 369 0.84396 .;Immunoglobulin I-set|Immunoglobulin-like domain|Immunoglobulin subtype;Immunoglobulin I-set|Immunoglobulin-like domain|Immunoglobulin subtype;Immunoglobulin I-set|Immunoglobulin-like domain|Immunoglobulin subtype . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.02381 1104.98 33 chr2 178709578 . T C 1104.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=-6.360e-01;DP=775;ExcessHet=0.0000;FS=0.784;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=11.63;ReadPosRankSum=-5.470e-01;SOR=0.836 GT:AD:DP:GQ:PL 0/1:48,47:95:99:1119,0,1223 20 0 1 0 chr5 110739163 110739163 G A exonic SLC25A46 . nonsynonymous SNV SLC25A46:NM_001303249:exon1:c.G44A:p.R15Q Neuropathy, hereditary motor and sensory, type VIB, Autosomal recessive YES 431 1088 3 0 0 3 0.00137678 . . 520552 not_provided|Inborn_genetic_diseases|Neuropathy,_hereditary_motor_and_sensory,_type_6B MedGen:C3661900|MeSH:D030342,MedGen:C0950123|MONDO:MONDO:0014671,MedGen:C4225302,OMIM:616505 criteria_provided,_multiple_submitters,_no_conflicts Uncertain_significance . . . . . . . . 0 D 0.997 D 0.703 P 0.000 D 1.000 D 1.95 M -2.07 D 0.385 D 0.655 D 0.529 4.449 23.7 3.97 1.197 6.384 12.95 0.512 0.669024271648 0.0002 . 0.0001 0 0 0 0 0.0002 0 0.0001 2.59e-05 4 154602 rs372382932 4.006e-05 3.899e-05 3.389e-05 4.641e-05 0.0002 3.164e-05 2.844e-05 3.445e-05 3.046e-05 0 0 0 0 0 0.0002 4.449e-05 1.726e-05 7.574e-05 3.941e-05 3.94e-05 5.137e-05 2.689e-05 0.0003 1.715e-05 1.129e-05 8.873e-05 5.283e-05 2.412e-05 0 0.0003 0 0 0 0 1.47e-05 0 0 0.0 0.91255 D 0.0 0.92824 D 0.997 0.70673 D 0.703 0.54270 P 0.000054 0.53742 D 0.121669 0.999375 0.81001 D 2.32 0.66415 M -2.07 0.86722 D -0.95 0.25332 N 0.544 0.57433 0.385 0.88875 D 0.655 0.88012 D 10 0.65353465 0.69741 D 0.669024 0.97235 D 0.512 0.79094 . . 0.74894119478 0.74667 0.6153829533266867 0.61470 0.0759007958584 0.08520 0.865649163723 0.91941 D 0.020416 0.16081 T 0.0210351 0.54521 T -0.0210237 0.68961 D 0.649829745292664 0.38455 D 0.871313 0.57716 D 0.53494847 0.69112 0.6057321 0.77080 0.53494847 0.69113 0.6057321 0.77081 -4.307 0.28274 T . . 0.432 0.61306 A .;. .;. 4.524098 0.70963 25.6 0.99885608978975193 0.96049 0.81999 0.41297 D ALL 0.674978 0.64052 D 0.530777707798563 0.68919 5.28398 0.501537179087623 0.68096 5.172866 1.0 0.98316 0.441713 0.08003 0 0.52208 0.09955 0 0.52208 0.10781 0 0.372554 0.06265 0 . . 4.88 3.97 0.45241 6.260000 0.72463 7.115000 0.57578 0.671000 0.69459 1.000000 0.71638 1.000000 0.68203 0.970000 0.54328 0.0:0.0:0.8367:0.1633 12.95 0.57792 884 0.28482 .;. . . . . . Uncertain significance 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.02381 861.98 38 chr5 110739163 . G A 861.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=0.470;DP=725;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=14.61;ReadPosRankSum=-1.710e-01;SOR=0.833 GT:AD:DP:GQ:PL 0/1:23,36:59:99:876,0,461 20 0 1 0 chr5 138783229 138783229 G C exonic CTNNA1 . nonsynonymous SNV CTNNA1:NM_001290307:exon3:c.G158C:p.G53A Macular dystrophy, patterned, 2, Autosomal dominant YES . . . . . . . . . . . . . . . . . . . . . . 0.95 T 0.872 P 0.705 P 0.000 D 1.000 D 2.565 M 1.14 T -0.734 T 0.233 T 0.777 5.021 29.6 5.71 2.704 9.813 19.458 0.449 0.0298016028861 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.002 0.72154 D 0.0 0.92824 D 0.571 0.47902 P 0.587 0.54320 P 0.000000 0.84330 D 0.000000 1 0.81001 D 2.545 0.74286 M 1.14 0.50192 T -4.75 0.80256 D 0.715 0.73555 -0.7338 0.58771 T 0.233 0.59953 T 10 0.69009626 0.71802 D 0.029802 0.52238 D 0.449 0.75004 0.523 0.62668 0.74418443796 0.74188 0.6178551982887122 0.61718 0.623089075282 0.56542 0.824554204941 0.85728 D 0.144529 0.81833 T 0.15507 0.69742 D -0.0150292 0.69355 D 0.991934299468994 0.82306 D 0.989912 0.96822 D 0.49686974 0.66910 0.4543378 0.68271 0.49686974 0.66911 0.4543378 0.68271 -10.414 0.76351 D 0.6032830217688735 0.67044 0.993 0.95728 P .;.;.;.;.;.;.;.;.;. .;.;.;.;.;.;.;.;.;. 5.243913 0.88041 29.5 0.99762842982922051 0.85172 0.99388 0.95384 D AEFGBI 0.962611 0.98426 D 0.565152398191243 0.71010 5.586284 0.627445119372814 0.76940 6.584647 0.999999999999999 0.74766 0.719381 0.83141 0 0.724815 0.89359 0 0.724815 0.87919 0 0.733575 0.97253 0 . . 5.71 5.71 0.89031 10.003000 0.99689 11.808000 0.96852 0.676000 0.76740 1.000000 0.71638 1.000000 0.68203 0.997000 0.79791 0.0:0.0:1.0:0.0 19.458 0.94897 451 0.79296 .;.;.;.;.;.;.;.;.;. . . . . . Uncertain significance 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.025 41.67 31 chr5 138783229 . G C 41.67 . AC=1;AF=0.025;AN=40;BaseQRankSum=-2.903e+00;DP=901;ExcessHet=0.0000;FS=207.787;InbreedingCoeff=-0.0504;MLEAC=1;MLEAF=0.025;MQ=60.00;MQRankSum=0.00;QD=0.76;ReadPosRankSum=0.911;SOR=7.824 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:40,15:55:55:.:.:55,0,681 19 0 1 1 chr6 79487294 79487294 C T exonic LCA5 . nonsynonymous SNV LCA5:NM_001122769:exon8:c.G1804A:p.A602T Leber congenital amaurosis 5 YES . . . . . . . . . . . . . . . . . . . . . . 0.14 T 0.42 B 0.142 B 0.009 N 0.801 N 1.78 L 1.45 T -1.089 T 0.032 T 0.151 1.530 11.07 3.06 2.594 1.771 6.393 0.042 0.00876262375145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.281 0.15458 T 0.214 0.26386 T 0.42 0.35330 B 0.142 0.33681 B 0.008987 0.30568 N 0.302761 0.800913 0.29116 N 1.905 0.50856 L 1.45 0.32482 T -0.71 0.20145 N 0.11 0.09631 -1.0895 0.05616 T 0.032 0.13592 T 10 0.07960212 0.12823 T 0.008763 0.23123 T 0.042 0.11227 0.302 0.27003 0.557090038421 0.55369 0.14585859686984937 0.14507 0.0729793403314 0.08176 0.343767911196 0.17000 T 0.08335 0.37035 T -0.203965 0.20235 T -0.530758 0.19210 T 0.516338050365448 0.33230 D 0.687031 0.29593 T 0.07728025 0.17530 0.05560244 0.09783 0.07728025 0.17530 0.05560244 0.09782 -2.69 0.07219 T 0.4612360741487166 0.54341 0.129 0.27583 B .;. .;. 2.998620 0.40058 21.1 0.93816275829678986 0.23794 0.73489 0.35947 D AEFBI 0.191982 0.31916 N 0.104287137318852 0.46662 2.903201 0.196178623831447 0.49637 3.164528 9.742792297922E-4 0.08079 0.638212 0.43195 0 0.573888 0.26702 0 0.618467 0.43123 0 0.668105 0.65232 0 . . 5.55 3.06 0.34374 1.785000 0.38315 1.752000 0.28483 0.549000 0.26987 1.000000 0.71638 1.000000 0.68203 0.980000 0.58198 0.3711:0.5363:0.0:0.0926 6.393 0.20798 569 0.70546 .;. . . . . . Uncertain significance 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0.02381 1776.98 41 chr6 79487294 . C T 1776.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=1.21;DP=939;ExcessHet=0.0000;FS=5.351;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=13.67;ReadPosRankSum=0.405;SOR=1.021 GT:AD:DP:GQ:PL 0/1:65,65:130:99:1791,0,1675 20 0 1 0 chr6 152331115 152331115 C G exonic SYNE1 . nonsynonymous SNV SYNE1:NM_033071:exon77:c.G13357C:p.V4453L Emery-Dreifuss muscular dystrophy 4, autosomal dominant, Autosomal dominant;Spinocerebellar ataxia, autosomal recessive 8, Autosomal recessive YES . . . . . . . . . . . . . . . . . . . . . . 0.61 T 0.005 B 0.013 B 0.325 N 1.000 D 0 N 1.38 T -0.982 T 0.014 T 0.053 0.267 5.442 0.886 -0.126 1.362 6.318 0.031 0.00754825800838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1.0 0.00964 T 0.034 0.53072 D 0.003 0.11197 B 0.004 0.10090 B 0.325020 0.14208 N 0.660669 1 0.81001 D 0.69 0.16971 N 1.38 0.34050 T -0.86 0.23372 N 0.117 0.11340 -0.9824 0.34445 T 0.014 0.05513 T 10 0.042183667 0.02943 T 0.007548 0.20033 T 0.031 0.07369 0.323 0.30387 0.170165803431 0.16609 0.20548542717459714 0.20465 0.130822632684 0.14758 0.293257117271 0.09399 T 0.127862 0.45515 T -0.311759 0.07593 T -0.685596 0.06647 T 0.025374189688588 0.01322 T 0.79652 0.44001 T 0.047435828 0.08107 0.051205635 0.08193 0.047435828 0.08107 0.051205635 0.08192 -0.288 0.00468 T . . 0.131 0.28145 B .;. .;. 0.577523 0.09458 6.239 0.69415960505877994 0.08965 0.95287 0.64137 D AEFDBI 0.517551 0.54362 D -0.98190325063367 0.08989 0.4236828 -0.848130851139563 0.13332 0.6910612 0.0729640935166664 0.15619 0.554377 0.28877 0 0.573888 0.26702 0 0.573888 0.23631 0 0.567892 0.33627 0 . . 6.03 0.886 0.18329 1.409000 0.34288 -0.077000 0.12225 -0.313000 0.06017 1.000000 0.71638 0.000000 0.08366 0.599000 0.31363 0.0:0.5304:0.1169:0.3527 6.318 0.20409 847 0.35998 .;. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.2 718.73 89 chr6 152331115 . C G 718.73 . AC=6;AF=0.200;AN=30;BaseQRankSum=-4.924e+00;DP=3151;ExcessHet=1.7912;FS=264.883;InbreedingCoeff=-0.2612;MLEAC=7;MLEAF=0.233;MQ=60.00;MQRankSum=0.00;QD=0.72;ReadPosRankSum=1.87;SOR=10.735 GT:AD:DP:GQ:PL 0/1:114,67:190:99:491,0,2241 9 0 6 6 chr7 92517375 92517375 C G exonic PEX1 . nonsynonymous SNV PEX1:NM_000466:exon5:c.G1140C:p.K380N Heimler syndrome 1, Autosomal recessive;Peroxisome biogenesis disorder 1A (Zellweger), Autosomal recessive;Peroxisome biogenesis disorder 1B (NALD/IRD), Autosomal recessive YES . . . . . . . . . . . . . . . . . . . . . . 0.4 T 0.363 B 0.075 B 0.019 N 1.000 N 1.04 L -3.4 D -0.359 T 0.603 D 0.122 0.897 8.644 3.12 0.389 0.619 4.650 0.109 0.0475338403156 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.279 0.17584 T 0.336 0.25061 T 0.363 0.33965 B 0.075 0.28327 B 0.019306 0.27286 N 0.456434 1 0.08975 N 2.045 0.56016 M -3.4 0.94469 D -1.55 0.37566 N 0.155 0.17691 -0.3587 0.73301 T 0.603 0.85889 D 10 0.08887786 0.15343 T 0.047534 0.62965 D 0.109 0.30843 0.401 0.43081 0.716802317414 0.71431 0.3910058426918759 0.39015 0.186505350035 0.20959 0.336459964514 0.15907 T 0.062784 0.36043 T -0.00308928 0.51229 T -0.242214 0.50583 T 0.312265932559967 0.25507 T 0.59684 0.22875 T 0.09054874 0.21191 0.05573271 0.09829 0.09054874 0.21190 0.05573271 0.09828 -3.984 0.23563 T 0.11421790710218607 0.10084 0.114 0.29367 B .;. .;. 0.689255 0.10580 7.285 0.99365745136551376 0.61198 0.16758 0.19535 N AEFBI 0.121693 0.23648 N -0.700700529756348 0.16002 0.8114796 -0.702350992884245 0.16902 0.8963152 0.234847843809107 0.18506 0.732398 0.92422 0 0.743671 0.97443 0 0.724815 0.87919 0 0.655142 0.61905 0 . . 5.94 3.12 0.34986 0.347000 0.19760 0.241000 0.16308 0.599000 0.40250 0.025000 0.20085 0.001000 0.17328 0.697000 0.34049 0.2559:0.5066:0.0:0.2375 4.650 0.11978 798 0.45050 .;. . . . . . Uncertain significance 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0.1923 826.23 74 chr7 92517375 . C T,G 826.23 . AC=4,1;AF=0.154,0.038;AN=26;BaseQRankSum=-3.290e+00;DP=1775;ExcessHet=1.1607;FS=208.468;InbreedingCoeff=-0.2780;MLEAC=6,1;MLEAF=0.231,0.038;MQ=60.00;MQRankSum=0.00;QD=1.39;ReadPosRankSum=0.648;SOR=9.953 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:107,47,0:154:99:0|1:92517375_C_T:285,0,2783,601,2914,3515:92517375 8 0 4 8 chr7 152229940 152229940 A G exonic KMT2C . nonsynonymous SNV KMT2C:NM_170606:exon18:c.T2959C:p.Y987H, . YES 526 320 669 7 0 683 0.516251 . . . . . . . . . . . . . . . 0 D 1.0 D 0.999 D 0.002 U 1.000 D 2.11 M -2.28 D 0.656 D 0.754 D 0.82 3.081 16.29 4.67 1.866 9.283 14.405 0.432 . . . 0.4728 0.4914 0.4863 0.4887 0.4732 0.4636 0.4765 0.4809 0.0018057 47 26028 rs77735469 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.001 0.78490 D . . . 1.0 0.90584 D 0.999 0.92359 D 0.001979 0.37549 U 0.000000 0.971252 0.38857 D 2.22 0.62911 M -2.28 0.87512 D -4.01 0.75456 D 0.934 0.93959 0.656 0.92620 D 0.754 0.91609 D 10 0.012159407 0.00262 T . . . 0.815 0.94046 . . . . 0.5529033843776924 0.55216 2.65390431601 0.98462 0.900072455406 0.96449 D 0.576893 0.86083 D 0.315486 0.84148 D 0.215397 0.83941 D 0.0127532117779022 0.00216 T 0.984602 0.94707 D 0.6018943 0.72793 0.5814447 0.75738 0.6018943 0.72794 0.5814447 0.75739 -9.256 0.69330 D 0.6635921527459159 0.73748 0.854 0.79986 P .;. .;. 4.408107 0.68175 25.2 0.99273378386417865 0.57627 0.99067 0.90742 D AEFBI 0.864295 0.78306 D 0.740431229350387 0.82279 7.723933 0.698705506977523 0.82280 7.728171 0.999787248307013 0.43007 0.651 0.46895 0 0.708844 0.79440 0 0.602189 0.34648 0 0.683762 0.67416 0 . . 4.67 4.67 0.58089 9.318000 0.95450 11.148000 0.87267 0.689000 0.82905 1.000000 0.71638 1.000000 0.68203 0.993000 0.69303 1.0:0.0:0.0:0.0 14.405 0.66648 929 0.16858 Zinc finger, PHD-finger|Zinc finger, RING-type|Zinc finger, PHD-type;Zinc finger, PHD-finger|Zinc finger, RING-type|Zinc finger, PHD-type . . . . . Benign 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0.4048 21206.9 371 chr7 152229940 . A G 21206.9 . AC=17;AF=0.405;AN=42;BaseQRankSum=-6.890e-01;DP=6803;ExcessHet=25.1139;FS=0.000;InbreedingCoeff=-0.6800;MLEAC=17;MLEAF=0.405;MQ=44.68;MQRankSum=0.452;QD=3.93;ReadPosRankSum=0.208;SOR=0.720 GT:AD:DP:GQ:PL 0/1:321,95:416:99:1229,0,10756 4 0 17 0 chr8 89981417 89981417 G A exonic NBN . nonsynonymous SNV NBN:NM_002485:exon3:c.C278T:p.S93L Aplastic anemia;Leukemia, acute lymphoblastic;Nijmegen breakage syndrome, Autosomal recessive YES 5 1515 2 0 0 2 0.000659631 . . 151941 Malignant_tumor_of_breast|Microcephaly,_normal_intelligence_and_immunodeficiency|Hereditary_cancer-predisposing_syndrome|not_provided|not_specified MONDO:MONDO:0007254,MedGen:C0006142|MONDO:MONDO:0009623,MedGen:C0398791,OMIM:251260,Orphanet:647|MONDO:MONDO:0015356,MeSH:D009386,MedGen:C0027672,Orphanet:140162|MedGen:C3661900|MedGen:CN169374 criteria_provided,_conflicting_classifications Conflicting_classifications_of_pathogenicity . . . . . . . . 0 D 0.944 P 0.461 P 0.026 N 0.878 D 1.545 L 0.18 T 0.443 D 0.612 D 0.217 3.693 18.76 5.71 2.682 5.441 19.844 0.457 0.0811154088027 0.0003 0.000798722 0.0007 0 0.0003 0 0 0.0002 0.0011 0.0044 0.0006015 93 154602 rs12721593 0.0004 0.0004 0.0002 0.0005 0.0045 0.0004 0.0004 0.0042 0.0040 5.975e-05 8.944e-05 0 0 9.362e-05 0 0.0001 0.0002 0.0045 0.0002 0.0002 0.0001 0.0002 0.0039 0.0001 9.244e-05 0.0026 0.0021 2.41e-05 0 0 0 0 0 0 5.883e-05 0 0.0039 0.004 0.65419 D 0.041 0.56192 D 0.944 0.53183 P 0.461 0.46460 P 0.026024 0.25988 N 0.469798 0.878238 0.35697 D 2.02 0.55341 M -2.34 0.87989 D -3.08 0.67941 D 0.234 0.27197 0.443 0.89732 D 0.612 0.86267 D 10 0.013203561 0.00281 T 0.081115 0.73610 D 0.457 0.75551 . . 0.951362630218 0.95084 0.3475136658926152 0.34665 0.111525478306 0.12590 0.354317069054 0.18556 T 0.372479 0.73665 T -0.293759 0.09262 T -0.194749 0.55143 T 0.102795711967771 0.12662 T 0.913209 0.70302 D 0.29610965 0.52554 0.45432168 0.68270 0.26362443 0.49428 0.41867685 0.65884 -11.508 0.82372 D . . 0.122 0.25882 B .;.;.;.;. .;.;.;.;. 4.124567 0.61670 24.4 0.99882310107774175 0.95813 0.90895 0.52464 D AEFDBCI 0.668672 0.63637 D 0.436439098388469 0.63439 4.577505 0.468873688622854 0.65937 4.887405 0.999999999999903 0.74766 0.75658 0.98901 0 0.672317 0.65289 0 0.658983 0.55881 0 0.656636 0.63459 0 . . 5.71 5.71 0.89031 7.172000 0.77164 6.514000 0.55815 0.618000 0.50648 1.000000 0.71638 1.000000 0.68203 0.326000 0.25110 0.0:0.0:1.0:0.0 19.844 0.96699 896 0.25515 Forkhead-associated (FHA) domain|Forkhead-associated (FHA) domain;.;Forkhead-associated (FHA) domain|Forkhead-associated (FHA) domain;.;. . . . . . Likely benign 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0.04762 2059.08 33 chr8 89981417 . G A 2059.08 . AC=2;AF=0.048;AN=42;DP=752;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=0.048;MQ=60.00;QD=30.28;SOR=1.352 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2087,204,0 20 1 0 0 chr8 143215486 143215486 G C exonic GPIHBP1 . nonsynonymous SNV GPIHBP1:NM_178172:exon4:c.G523C:p.G175R, Hyperlipoproteinemia, type 1D, Autosomal recessive YES 402 1117 3 0 0 3 0.00134108 . . 153747 Hyperlipoproteinemia,_type_1D|GPIHBP1-related_disorder|Cardiovascular_phenotype|not_provided MONDO:MONDO:0014412,MedGen:C4014767,OMIM:615947,Orphanet:444490,Orphanet:535458|.|MedGen:CN230736|MedGen:C3661900 criteria_provided,_conflicting_classifications Conflicting_classifications_of_pathogenicity . . . . . . . . 0.01 D 0.993 D 0.831 P 0.868 N 1.000 N 0.695 N -1.8 D -0.539 T 0.345 T 0.314 2.100 12.98 -4.12 -1.291 -0.429 5.997 0.721 0.0667380994633 0.0021 0.00219649 0.0011 0.0073 0.0021 0 0 0.0005 0.0044 0 0.0008473 131 154602 rs145844329 0.0006 0.0006 0.0006 0.0006 0.0053 0.0006 0.0006 0.0047 0.0044 0.0053 0.0017 0.0005 0 0.0001 0.0020 0.0005 0.0014 5.814e-05 0.0020 0.0020 0.0020 0.0020 0.0055 0.0018 0.0017 0.0049 0.0047 0.0055 0 0.0012 0.0012 0 9.411e-05 0.0102 0.0005 0.0043 0 . . . 0.015 0.61642 D . . . . . . 0.867515 0.08849 N 0.924044 1 0.08975 N . . . . . . . . . 0.184 0.19995 -0.5388 0.67208 T 0.345 0.71004 T 10 0.01230523 0.00265 T 0.066738 0.69964 D . . . . 0.488757021912 0.48508 0.783717957866859 0.78322 . . 0.358868032694 0.19220 T . . . -0.502283 0.00555 T -0.492214 0.23159 T 0.0388956787987601 0.03491 T . . . . . . . . . . . . . . . . 0.467 0.63033 A . . 0.652615 0.10212 6.949 0.93599898295013573 0.23457 0.03907 0.09289 N AEFDBI 0.105086 0.21008 N -0.713715911269836 0.15635 0.7897153 -0.971493214629424 0.10429 0.5251846 0.107372829030956 0.16554 0.554377 0.28877 0 0.588066 0.40923 0 0.578056 0.29568 0 0.562822 0.20929 0 . . 4.19 -4.12 0.03650 -1.759000 0.01906 . . -0.169000 0.11342 0.000000 0.06391 0.000000 0.08366 0.001000 0.02609 0.6117:0.1518:0.2366:0.0 5.997 0.18731 981 0.03995 . . . . . . Likely benign 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0.02381 1049.98 46 chr8 143215486 . G C 1049.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=1.04;DP=903;ExcessHet=0.0000;FS=1.843;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=13.29;ReadPosRankSum=0.491;SOR=0.569 GT:AD:DP:GQ:PL 0/1:38,41:79:99:1064,0,907 20 0 1 0 chr9 13206036 13206036 C T exonic MPDZ . nonsynonymous SNV MPDZ:NM_001261406:exon11:c.G1354A:p.G452R Hydrocephalus, nonsyndromic, autosomal recessive 2, Autosomal recessive YES . . . . . . . . . . . . . . . . . . . . . . 0.07 T 1.0 D 1.0 D 0.001 D 1.000 D 2.51 M 0.76 T -0.451 T 0.347 T 0.789 4.217 21.9 6.17 2.941 5.801 19.651 0.446 0.0222801088254 . . 8.518e-06 0 0 0 0 1.541e-05 0 0 6.5e-06 1 154602 rs749740776 1.369e-06 1.368e-06 0 2.752e-06 0.0003 2.3e-07 9e-08 6.096e-05 2.522e-05 0 0 0 0 0 0.0003 0 0 0 . . . . . . . . . . . . . . . . . . . 0.012 0.56456 D 0.0 0.92824 D 1.0 0.90584 D 1.0 0.97372 D 0.000516 0.43753 D 0.000000 0.999999 0.58761 D 2.75 0.80375 M 0.76 0.49919 T -7.05 0.93856 D 0.669 0.72746 -0.4511 0.70364 T 0.347 0.71186 T 10 0.80933845 0.80235 D 0.02228 0.45152 T 0.446 0.74797 0.577 0.70217 0.6507085132 0.64780 0.6993112114150418 0.69872 . . 0.641533851624 0.58782 T 0.140825 0.47556 T 0.12792 0.67158 D -0.0540281 0.66747 D 0.848120342373097 0.50004 D 0.956938 0.85427 D 0.40625045 0.61163 0.47328448 0.69469 0.40625045 0.61164 0.47328448 0.69469 -11.878 0.84251 D . . 0.378 0.66325 A .;.;.;.;.;. .;.;.;.;.;. 4.314025 0.65970 24.9 0.99944052586096943 0.99868 0.91140 0.52938 D AEFDBHCIJ 0.713789 0.66647 D 0.800178952187788 0.86116 8.783542 0.76222932149692 0.87066 9.096122 0.999999999788585 0.74766 0.706298 0.61202 0 0.573888 0.26702 0 0.709663 0.75317 0 0.714379 0.83352 0 . . 6.17 6.17 0.99707 5.726000 0.68163 7.711000 0.66806 0.599000 0.40250 1.000000 0.71638 1.000000 0.68203 0.924000 0.46004 0.0:1.0:0.0:0.0 19.651 0.95800 614 0.66605 PDZ domain|PDZ domain|PDZ domain;.;.;.;.;PDZ domain|PDZ domain|PDZ domain . . . . . Uncertain significance 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.02381 2356.98 35 chr9 13206036 . C T 2356.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=-2.350e-01;DP=871;ExcessHet=0.0000;FS=1.305;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=14.73;ReadPosRankSum=-4.700e-01;SOR=0.851 GT:AD:DP:GQ:PL 0/1:72,88:160:99:2371,0,1885 20 0 1 0 chr9 97675578 97675578 C T exonic XPA . nonsynonymous SNV XPA:NM_000380:exon6:c.G683A:p.R228Q Xeroderma pigmentosum, group A, Autosomal recessive YES . . . . . . . . . 139202 Xeroderma_pigmentosum|Xeroderma_pigmentosum_group_A|not_specified|not_provided MONDO:MONDO:0019600,MedGen:C0043346,Orphanet:910|MONDO:MONDO:0010210,MedGen:C0268135,OMIM:278700,Orphanet:910|MedGen:CN169374|MedGen:C3661900 criteria_provided,_multiple_submitters,_no_conflicts Uncertain_significance . . . . . . . . 0.34 T 0.999 D 0.749 P 0.000 D 1.000 D 1.21 L 0.19 T -0.836 T 0.237 T 0.69 3.458 17.72 5.32 2.941 5.080 18.314 0.164 0.0091672645802 0.0002 . 0.0002 0 0.0005 0 0.0002 0.0002 0 0.0004 0.000194 30 154602 rs1805160 0.0002 0.0002 0.0002 0.0002 0.0004 0.0002 0.0001 0.0003 0.0002 0 0.0004 0 0 1.873e-05 0.0002 0.0002 0.0002 0.0003 0.0002 0.0002 0.0002 0.0001 0.0004 0.0001 9.251e-05 0.0002 0.0001 0.0001 0 0.0004 0 0 0 0 0.0002 0.0005 0 0.324 0.13392 T 0.414 0.14369 T 0.999 0.77913 D 0.749 0.56004 P 0.000041 0.55875 D 0.120373 0.999976 0.53665 D 1.445 0.36358 L 0.19 0.60236 T -0.34 0.12661 N 0.571 0.59393 -0.8361 0.52904 T 0.237 0.60415 T 10 0.30437988 0.47963 T 0.009167 0.24107 T 0.164 0.42212 . . 0.778699477751 0.77666 0.5068949228481926 0.50611 0.348634746703 0.36727 0.455722332001 0.32725 T 0.13331 0.46391 T -0.142294 0.29524 T -0.114211 0.62274 T 0.0832293260933461 0.10395 T 0.968903 0.88767 D 0.2574539 0.48789 0.16138756 0.37542 0.2574539 0.48789 0.16138756 0.37541 -7.794 0.59658 D 0.27995976538383904 0.37509 0.155 0.34205 B . . 4.321340 0.66145 24.9 0.99627310574728833 0.75837 0.93529 0.58465 D AEFBCI 0.637600 0.61632 D 0.545348310304314 0.69798 5.408643 0.59074979274206 0.74272 6.10945 0.999999999999726 0.74766 0.722319 0.85440 0 0.698795 0.70079 0 0.575934 0.27490 0 0.714379 0.83352 0 . . 5.32 5.32 0.75377 5.303000 0.65530 7.657000 0.64017 0.599000 0.40250 1.000000 0.71638 1.000000 0.68203 0.997000 0.79791 0.0:1.0:0.0:0.0 18.314 0.90153 672 0.60758 . . . . . . Uncertain significance 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.02381 1385.98 35 chr9 97675578 . C T 1385.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=-3.700e-01;DP=859;ExcessHet=0.0000;FS=0.626;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=9.43;ReadPosRankSum=2.24;SOR=0.613 GT:AD:DP:GQ:PL 0/1:84,63:147:99:1400,0,1982 20 0 1 0 chr10 28616202 28616202 A G exonic WAC . nonsynonymous SNV WAC:NM_100486:exon11:c.A1277G:p.N426S Desanto-Shinawi syndrome, Autosomal dominant YES . . . . . . . . . . . . . . . . . . . . . . 0.75 T 0.99 D 0.979 D 0.000 D 1.000 D 0.895 L 0.87 T -0.991 T 0.153 T 0.097 2.579 14.58 5.51 2.225 8.910 15.925 0.161 0.0175587853424 . . 8.325e-06 9.63e-05 0 0 0 0 0 0 6.5e-06 1 154602 rs200723559 7.548e-06 7.524e-06 6.825e-06 8.278e-06 5.987e-05 4.05e-06 2.96e-06 9.91e-06 3.71e-06 5.987e-05 0 0 0 0 0 7.211e-06 0 1.165e-05 . . . . . . . . . . . . . . . . . . . 0.005 0.63226 D 0.721 0.12704 T 0.958 0.63424 D 0.763 0.74454 P 0.000000 0.84330 D 0.000000 0.999998 0.58761 D 1.955 0.52871 M 0.87 0.46412 T -0.86 0.26422 N 0.606 0.65587 -0.9911 0.32321 T 0.153 0.48274 T 10 0.39020246 0.54836 T 0.017559 0.39307 T 0.161 0.41658 0.158 0.06178 0.309278343525 0.30543 0.5129718324782301 0.51219 0.471905473178 0.46439 0.53257060051 0.43397 T 0.022149 0.19707 T -0.29562 0.09078 T -0.480886 0.24352 T 0.412787113171348 0.29422 T 0.978002 0.92190 D 0.39335003 0.60269 0.38982183 0.63792 0.39335003 0.60269 0.38982183 0.63792 -1.399 0.01778 T . . 0.073 0.08657 B .;.;.;. .;.;.;. 4.378855 0.67476 25.1 0.99694186398609241 0.80180 0.99378 0.95249 D AEFBI 0.898612 0.84210 D 0.457896562310662 0.64654 4.724686 0.535174124551449 0.70373 5.495638 0.999957284795114 0.48110 0.706548 0.73137 0 0.724815 0.89359 0 0.702456 0.68683 0 0.714379 0.83352 0 . . 5.51 5.51 0.81769 8.867000 0.91934 11.305000 0.92359 0.756000 0.94297 1.000000 0.71638 1.000000 0.68203 0.998000 0.85391 1.0:0.0:0.0:0.0 15.925 0.79395 846 0.36215 .;.;.;. . . . . . Uncertain significance 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0.02381 1405.98 35 chr10 28616202 . A G 1405.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=1.30;DP=868;ExcessHet=0.0000;FS=1.441;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=11.62;ReadPosRankSum=-1.589e+00;SOR=0.561 GT:AD:DP:GQ:PL 0/1:64,57:121:99:1420,0,1510 20 0 1 0 chr11 5225678 5225678 C G exonic HBB . nonsynonymous SNV HBB:NM_000518:exon3:c.G364C:p.E122Q, Delta-beta thalassemia, Autosomal dominant;Erythremias, beta- (3);Heinz body anemias, beta-, Autosomal dominant;Hereditary persistence of fetal hemoglobin, Autosomal dominant;Methemoglobinemias, beta- (3);Sickle cell anemia, Autosomal recessive;Thalassemia-beta, dominant inclusion-body;Thalassemias, beta- YES 0 1497 24 1 0 26 0.00860927 . . 30191 beta_Thalassemia|Hb_D-Los_Angeles|HBB-related_disorder|not_provided|Heinz_body_anemia|Hemoglobin_D_disease|Hb_SS_disease MONDO:MONDO:0019402,MedGen:C0005283,Orphanet:848|.|MedGen:CN239378|MedGen:C3661900|Human_Phenotype_Ontology:HP:0005511,MONDO:MONDO:0007705,MedGen:C0700299,OMIM:140700,Orphanet:178330|MONDO:MONDO:0019537,MedGen:C0272080,Orphanet:90039|MONDO:MONDO:0011382,MedGen:C0002895,OMIM:603903,Orphanet:232 criteria_provided,_multiple_submitters,_no_conflicts Pathogenic/Likely_pathogenic . . . . . . . . 0.01 D 0.174 B 0.007 B . . 1.000 N 2.69 M -3.36 D 0.285 D 0.784 D 0.896 1.164 9.736 4.68 2.589 4.047 15.475 0.575 0.23278745787 0.0002 0.000599042 0.0007 0 0.0003 0 0 0.0001 0.0022 0.0043 0.000608 94 154602 rs33946267 0.0005 0.0005 0.0003 0.0006 0.0051 0.0004 0.0004 0.0047 0.0045 5.974e-05 0.0001 0 0 0 0.0019 0.0002 0.0004 0.0051 0.0002 0.0002 0.0001 0.0003 0.0044 0.0002 0.0001 0.0029 0.0025 7.22e-05 0 0 0 0 0 0 0.0001 0 0.0044 0.006 0.61437 D 0.109 0.37449 T 0.174 0.28827 B 0.007 0.12992 B . . . . 1 0.08975 N 3.045 0.86684 M -3.36 0.94067 D -1.73 0.41046 N 0.509 0.54059 0.285 0.87314 D 0.784 0.92663 D 9 0.017982274 0.00387 T 0.232787 0.88337 D 0.575 0.82799 . . 0.993264840891 0.99319 0.7264923966125129 0.72593 0.0337626008877 0.03542 0.372132986784 0.21138 T 0.027149 0.19941 T 0.0928782 0.63512 D 0.36159 0.90762 D 0.0634609066813779 0.07702 T 0.866213 0.56644 D 0.3287237 0.55366 0.21583228 0.46188 0.36926448 0.58531 0.18763994 0.42007 -8.299 0.63089 D 0.3426908369855942 0.44034 0.204 0.42877 B .;. .;. 3.065211 0.41183 21.3 0.97588656222229542 0.34780 0.90271 0.51315 D AEFDGBHCI 0.869951 0.79071 D -0.0666117936946236 0.38864 2.282815 -0.0677246373714052 0.36733 2.141517 0.99999999999992 0.74766 0.500041 0.20204 0 0.573888 0.26702 0 0.624306 0.44879 0 0.564101 0.26826 0 . . 4.68 4.68 0.58319 4.942000 0.63247 . . 0.599000 0.40250 0.984000 0.35821 0.903000 0.28003 0.060000 0.15972 0.0:1.0:0.0:0.0 15.475 0.75199 862 0.33134 Globin;Globin . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.02381 779.98 33 chr11 5225678 . C G 779.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=-7.200e-02;DP=778;ExcessHet=0.0000;FS=1.842;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=9.87;ReadPosRankSum=-1.921e+00;SOR=0.923 GT:AD:DP:GQ:PL 0/1:45,34:79:99:794,0,1100 20 0 1 0 chr13 32340455 32340455 C T exonic BRCA2 . nonsynonymous SNV BRCA2:NM_000059:exon11:c.C6100T:p.R2034C, Fanconi anemia, complementation group D1, Autosomal recessive;Wilms tumor, Autosomal dominant, Somatic mutation YES . . . . . . . . . 49997 Hereditary_cancer-predisposing_syndrome|Familial_cancer_of_breast|Breast_and/or_ovarian_cancer|Hereditary_breast_ovarian_cancer_syndrome|not_specified|Breast-ovarian_cancer,_familial,_susceptibility_to,_2|not_provided MONDO:MONDO:0015356,MeSH:D009386,MedGen:C0027672,Orphanet:140162|MONDO:MONDO:0016419,MedGen:C0346153,OMIM:114480,Orphanet:227535|MedGen:CN221562|MONDO:MONDO:0003582,MeSH:D061325,MedGen:C0677776,Orphanet:145|MedGen:CN169374|MONDO:MONDO:0012933,MedGen:C2675520,OMIM:612555,Orphanet:145|MedGen:C3661900 reviewed_by_expert_panel Benign . . . . . . . . 0.16 T 0.876 P 0.118 B 0.959 N 1.000 N 0 N 5.73 T -0.915 T 0.001 T 0.62 0.809 8.253 1.77 0.757 -0.259 3.261 0.181 0.181494877087 0.0040 0.00139776 0.0032 0.0020 0.0038 0 0.0002 0.0049 0.0011 0 0.0034928 540 154602 rs1799954 0.0046 0.0046 0.0048 0.0045 0.0056 0.0045 0.0045 0.0055 0.0054 0.0017 0.0041 0.0013 5.044e-05 0.0003 0.0016 0.0056 0.0043 4.638e-05 0.0034 0.0034 0.0038 0.0030 0.0053 0.0031 0.0030 0.0049 0.0047 0.0014 0.0132 0.0043 0.0012 0.0002 0 0.0034 0.0053 0.0038 0 0.016 0.51853 D 0.163 0.31125 T . . . . . . 0.958965 0.08237 N 0.981833 1 0.08975 N . . . 5.73 0.00718 T -2.92 0.61129 D 0.205 0.22742 -0.9150 0.46220 T 0.001 0.00348 T 10 0.006237477 0.00141 T 0.181495 0.85559 D 0.181 0.45247 . . 0.83472859845 0.83315 0.21720949376217583 0.21636 0.0217662487464 0.02172 0.215782105923 0.01081 T . . . -0.471652 0.00830 T -0.445707 0.28172 T 0.0217174328020198 0.00877 T . . . . . . . . . . . . . . . . 0.073 0.06942 B .;. .;. 1.622599 0.20726 14.88 0.99669379636117372 0.78458 0.12584 0.17358 N AEFGBI 0.144224 0.26713 N -0.659152104289088 0.17195 0.8826905 -0.713915510446324 0.16614 0.8797485 0.950777945610966 0.27916 0.660377 0.49826 0 0.633656 0.55848 0 0.696353 0.63694 0 0.655142 0.61905 0 . . 5.72 1.77 0.23848 -0.243000 0.08933 0.066000 0.14196 0.599000 0.40250 0.000000 0.06391 0.000000 0.08366 0.001000 0.02609 0.214:0.5303:0.1049:0.1509 3.261 0.06444 748 0.52143 .;. . . . . . Likely benign 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0.02381 2506.98 110 chr13 32340455 . C T 2506.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=1.33;DP=2255;ExcessHet=0.0000;FS=3.061;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=11.77;ReadPosRankSum=-9.220e-01;SOR=0.702 GT:AD:DP:GQ:PL 0/1:110,103:213:99:2521,0,2556 20 0 1 0 chr14 87947880 87947880 T G splicing GALC NM_000153:exon13:c.1339-2A>C;NM_001201402:exon13:c.1261-2A>C;NM_001201401:exon12:c.1270-2A>C . . Krabbe disease, Autosomal recessive YES . . . . . . . 1.0000 0.804 . . . . . . . . . . . . . . . . . . . . . 1.000 D . . . . . . . . . 1.317 10.32 3.66 2.343 1.628 8.987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 0.81001 D . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.625005 0.99412 D 0.66 0.99401 D . . . . . . . . . . . . . . . . . . . . . . .;.;.;. .;.;.;. 7.048355 0.96078 35 0.96312423662121505 0.29387 0.90279 0.51329 D AEFBI . . . 0.834703617961455 0.88221 9.49745 0.637691033602847 0.77695 6.729492 0.662390159466227 0.22285 0.088506 0.02282 0 0.096993 0.02736 0 0.060301 0.00762 0 0.057018 0.00518 0 0.774629 0.45842 6.11 3.66 0.41111 2.105000 0.41449 7.874000 0.72122 0.665000 0.62972 1.000000 0.71638 1.000000 0.68203 0.337000 0.25363 0.1223:0.0:0.127:0.7507 8.987 0.35161 920 0.19381 .;.;.;. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.2632 935.62 37 chr14 87947880 . T G 935.62 . AC=10;AF=0.263;AN=38;BaseQRankSum=-1.210e+00;DP=599;ExcessHet=6.5132;FS=356.125;InbreedingCoeff=-0.3595;MLEAC=11;MLEAF=0.289;MQ=60.00;MQRankSum=0.00;QD=2.47;ReadPosRankSum=1.35;SOR=9.869 GT:AD:DP:GQ:PL 0/1:21,14:35:99:108,0,330 9 0 10 2 chr15 66781000 66781000 C T exonic SMAD6 . nonsynonymous SNV SMAD6:NM_005585:exon4:c.C956T:p.A319V, Aortic valve disease 2, Autosomal dominant YES 0 1508 14 0 0 14 0.00462046 . . 400802 not_provided|Inborn_genetic_diseases|Aortic_valve_disease_2|SMAD6-related_disorder MedGen:C3661900|MeSH:D030342,MedGen:C0950123|MONDO:MONDO:0013902,MedGen:C3542024,OMIM:614823|. criteria_provided,_multiple_submitters,_no_conflicts Likely_benign . . . . . . . . 0.18 T 0.846 P 0.297 B 0.000 D 1.000 D 1.39 L -4.12 D 0.697 D 0.813 D 0.562 3.608 18.37 5.6 2.639 5.977 19.599 0.527 0.0767883996253 0.0003 0.000998403 0.0013 0.0004 0.0015 0 0 0.0012 0 0.0021 0.0003881 60 154602 rs148705603 0.0003 0.0003 0.0003 0.0003 0.0040 0.0003 0.0003 0.0028 0.0023 3.076e-05 0.0002 0 2.663e-05 0.0001 0.0040 0.0002 0.0005 0.0016 0.0002 0.0002 0.0003 0.0002 0.0023 0.0002 0.0002 0.0013 0.0010 2.405e-05 0 0.0001 0 0 0 0.0034 0.0003 0 0.0023 0.035 0.43708 D 0.075 0.42794 T 0.846 0.46778 P 0.297 0.40924 B 0.000043 0.53742 D 0.162323 0.999986 0.54805 D 1.25 0.31749 L -4.2 0.96934 D -1.21 0.30762 N 0.08 0.05542 0.697 0.93135 D 0.813 0.93694 D 10 0.014975667 0.00314 T 0.076788 0.72616 D 0.527 0.80007 . . 0.899869699253 0.89888 0.3696680241509792 0.36880 0.287055191876 0.31101 0.611766695976 0.54566 T 0.352602 0.72001 T -0.0999958 0.36426 T 0.064572 0.74549 D 0.0235789092115007 0.01093 T 0.859414 0.55137 D 0.13933204 0.32190 0.15219748 0.35819 0.13933204 0.32190 0.15219748 0.35819 -4.001 0.23819 T 0.16263586563156013 0.19990 0.182 0.39477 B . . 3.598537 0.50813 23.0 0.99710938985853192 0.81353 0.90917 0.52507 D AEFGBCI 0.759812 0.69802 D 0.313917936354864 0.56863 3.85174 0.437907202079968 0.63944 4.638658 0.999999999997117 0.74766 0.646311 0.45356 0 0.573888 0.26702 0 0.645312 0.48771 0 0.635551 0.53088 0 . . 5.6 5.6 0.84997 6.058000 0.70754 7.601000 0.61564 0.599000 0.40250 1.000000 0.71638 1.000000 0.68203 0.979000 0.57723 0.0:1.0:0.0:0.0 19.599 0.95546 424 0.81215 . . . . . . Uncertain significance 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0.02381 716.98 33 chr15 66781000 . C T 716.98 . AC=1;AF=0.024;AN=42;BaseQRankSum=-3.143e+00;DP=649;ExcessHet=0.0000;FS=1.895;InbreedingCoeff=-0.0244;MLEAC=1;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=22.41;ReadPosRankSum=-5.880e-01;SOR=0.379 GT:AD:DP:GQ:PL 0/1:8,24:32:99:731,0,222 20 0 1 0